Getting data¶

Manually fetching data¶

In Database -> Pipelines, select your samples, and press Snapshot. This downloads the latest raw data, parses it to an open format, analyses it together with any existing data, and updates the data folder.

Automatically fetching data¶

aurora-daemon

This starts a process that updates the cycler status every 5 minutes, and fetches and analyses all new data overnight. Only one machine should be running the daemon.

Manually uploading data¶

Datasets can be uploaded manually as a zip if they follow this structure:

dataset.zip/
├── sample_id_01/
│   ├── data_file.bdf.parquet
│   └── data_file.bdf.csv
├── sample_id_02/
│   └── data_file.mpr
└── sample_id_03/
    └── data_file.ndax

i.e. each folder name is a unique Sample ID, and the folder contains time-series data for that sample in BDF format, or Biologic .mpr, or Neware .ndax. The file names do not matter.